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Jankovská V. 2004: Plešné jezero-archiv informací o holocenním a svrchněpleistocenním charakteru vegetace, krajiny a jezerního biotopu (první výsledky). In: Dvořák L. et Šustr P. (eds.): Aktuality Šumavského výzkumu II., Sborník z konference, Srní 4.-7.října 2004, 139 - 145.
Jarolímová V. 2004: Influence of toxic substrates of the abandoned sedimentation basins on chromosome apparatus of vascular plants. In: Kovář P. (ed) Natural Recovery of Human-Made Deposits in Lanscape (Biotic Interactions and Ore/Ash-Slag Artificial Ecosystems). Academia, Praha, 77 - 82.
J. Kirschner, L. Rejdali M. & Drábková L. 2004: A new Juncus of the sect. Tenageia from Marocco. Preslia 76 (4), 371 - 376.
Jonášová M. & Prach K. 2004: Central-European mountain spruce (Picea abies (L.) Karst) forest: regeneration of tree species after a bark beetle outbreak. 23, 15 - 27.
Jongepierová I. Jongepier J.W. & Klimeš L. 2004: Restoring grasslands on arable land: an example of a fast spontaneous succession without weed-dominated stages. 76, 361 - 369.
Kaplan Z. & Fehrer J. 2004: Evidence for the hybrid origin of Potamogeton ×cooperi (Potamogetonaceae): traditional morphology-based taxonomy and molecular techniques in concert. Folia Geobotanica 39, 431 - 453.
Kaplan Z. & Symoens J.-J. 2004: Proposal to conserve the name Potamogeton schweinfurthii A. Benn. (Potamogetonaceae) with a conserved type. Taxon 53, 837 - 838.
Kaplan Z. & Wolff P. 2004: A morphological, anatomical and isozyme study of Potamogeton ×schreberi: confirmation of its recent occurrence in Germany and first documented record in France. Preslia 76, 141 - 161.
Kaplan Z. & Zalewska-Gałosz J. 2004: Potamogeton taxa proposed by J. F. Wolfgang and his collaborators. Taxon 53, 1033 - 1041.
Kirschner J., Bartish I., Hroudová Z., Kirschnerová L. & Zákravský P 2004: Contrasting patterns of spatial genetic structure of diploid and triploid populations of the clonal aquatic species, Butomus umbellatus (Butomaceae), in Central Europel. Folia Geobotanica 39 (1), 13 - 26.
Kirschner J. &Štěpánek J. 2004: New sections in Taraxacum. Folia Geobotanica 39, 259 - 274.
Klimešová J., Martínková, J. & Kočvarová, M. 2004: Biological flora of Central Europe: Rorippa palustris (L.) Besser. Flora 199, 453 - 463.
Klitsch M. & Härtel H. 2004: Invaze borovice vejmutovky v Národním parku České Švýcarsko. In: Neuhöferová P. (ed.) Introdukované dřeviny a jejich produkční a ekologický význam, 109 - 112.
Komárek J. & Golubic S. 2004: Proposal for a unified nomenclatoric rules for cyanobacteria vs. cyanophytes. In: Hoffmann L. (ed.) 16th Symposium of the International Association for Cyanophyte Research, Abstracts, CRP Gabriel Lippmann, Luxembourg, 47 - 47.
Komárek J. & Hauer T. 2004: The on-line database of cyanobacterial genera. In: Hoffmann L. (ed.) 16th Symposium of the International Association for Cyanophyte Research, Abstracts, CRP Gabriel Lippmann, Luxembourg, 90 - 90.
Komárek J., Ventura S., Turicchia S., Komárková J., Mascalchi C., Soldati E. & Rejmánková E. 2004: Cyanobacterial diversity in alkaline marshes of Northern Belize (Central America). In: Hoffmann L. (ed.) 16th Symposium of the International Association for Cyanophyte Research, Abstracts, CRP Gabriel Lippmann, Luxembourg, 46 - 46.
Koukol O., Gryndler M., Novák F. & Vosátka M. 2004: Effect of Chalara longipes on decomposition of humic acids from Picea abies needle litter. Folia Microbiologica 49, 574 - 578.
Kovářová M. & Frantík T. 2004: Decomposition of organic matter on different substrates – laboratory study. In: Kovář P. (ed.) Natural recovery of human-made deposits in landscape, Academia,Praha, 153 - 175.
Kovář P., Štěpánek J. & Kirschner J. 2004: Clonal diversity of Calamagrostis epigejos (L.) Roth in relation to type of industrial substrate and successional stage. In: Kovář P. (ed.) Natural recovery in human-made deposits in landscape, Academia, Praha, 285 - 293.
Krahulcová A., Papoušková S. & Krahulec F. 2004: Reproduction mode in the allpolyploid facultatively apomictic hawkweed Hieracium rubrum (Asteraceae, H. subgen. Pilosella)..