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Suda J. & Trávníček P. 2006: Estimation of Relative Nuclear DNA Content in Dehydrated Plant Tissues by Flow Cytometry. In: Robinson J. P., Darzynkiewicz Z., Dobrucki J., Hyun W., Nolan J., Orfao A., Rabinovitch P. (eds.): Current Protocols in Cytometry. Unit 7.30, pp. 7.30.1-7.30.14. – John Wiley & Sons, New York., 1 - 14.
Suzuki J., Herben T., Krahulec F., Štorchová H. & Hara T. 2006: Effects of neighbourhood structure and tussock dynamics on genet demography of Festuca rubra in a mountain meadow. Journal of Ecology 94, 66 - 76.
Šabatská M. & Elster J. 2006: Response of cyanobacteria and algae from Antarctic wetland habitats to freezing and desiccation stress. Polar Biology 30, 31 - 37.
Šejnohová L. & Maršálek B. 2006: Microcystis - dominující rod vodních květů: nové poznatky v autekologii. In: Marsalek B., Feldmannova M. & Marsalkova E. (ed.) Sbornik seminare Cyanobakterie 2006. Botanicky ustav AV CR, Pruhonice, CR (ISBN 80-86188-22-1), 7 - 12.
Šejnohová L., Maršálek B., Némethová D. & Welker M. 2006: Lze predikovat výskyt toxických oligopeptidů u sinice rodu Microcystis mikroskopickým rozborem? In: Marsalek B., Feldmannova M. & Marsalkova E. (ed.) Sbornik seminare Cyanobakterie 2006. Botanicky ustav AV CR, Pruhonice, CR (ISBN 80-86188-22-1), 29 - 34.
Šmídová A. 2006: Popelivka sibiřská (Ligularia sibirica) na Jestřebských slatinách. Severočeskou přírodou 38, 11 - 17.
Šoun J., Halda J., Kocourková J., Liška J., Palice Z., Peksa O., Slavíková-Bayerová Š., Svoboda D., Uhlík P. & Vondrák J. 2006: Lišejníky zaznamenané během 16. bryologicko-lichenologických dnů v Kameničkách (CHKO Žďárské vrchy, 2.-5.10.2003). Bryonora 38, 39 - 47.
Štěpánková J. 2006: Karyotaxonomy of Myosotis alpestris group. Preslia 78, 345 - 352.
Šumberová K., Lososová Z., Fabšičová M. & Horáková V. 2006: Variability of vegetation of exposed pond bottoms in relation to management and environmental factors. Preslia 78, 235 - 252.
Trojánková, K. 2006: Krásivková flóra CHKO Slavkovský les. Erica 13, 3 - 15.
Trojánková, K. & Přibyl, P. 2006: Negative photomovements of desmid Micrasterias rotata as response to strong light. Czech Phycology 6, 135 - 142.
Tůma I., Fiala K. & Holub P. 2006: Comparison of biomass formation, nutrient uptake and release in grass and fern stands on deforested polluted areas. Bugár G., Boltižiar M. (eds.) Abstract proceedings of the 14th International Symposium on Problems of Landscape Ecology Research, ILE SAS Nitra, 91 - 92.
Tůma I., Fiala K., Holub P. & Pande K. 2006: Biomass formation, nutrient uptake and release in fern stands of Athyrium distentifolium on deforested areas affected by pollution: comparison with grass stands. Ekológia, Bratislava 25, 264 - 279.
Urban O., Tůma I., Holub P. & Marek M.V. 2006: Photosynthesis and growth response of Calamagrostis arundinacea and C. villosa to enhanced UV-B radiation. Photosynthetica 44(2), 215 - 220.
Vondrák J., Kocourková J., Palice Z. & Liška J. 2006: New and noteworthy lichens in the Czech Republic – genus Rinodina. In: Lackovičová A., Guttová A., Lisická E. & Lizoň P. (eds.), Central European lichens – diversity and threat, Mycotaxon Ltd., Ithaca., 109 - 117.
Vondrák J. & Prach K. 2006: Occurrence of heliophilous species on isolated rocky outcrops in a forested landscape: relict species or recent arrivals? Preslia 78, 115 - 121.
Vosátka M., Rydlová J., Sudová R. & Vohník M. 2006: Mycorrhizal fungi as helping agents in phytoremediation of degraded and contaminated soils. In: FOCUS on Biotechnology, Vol. 9A, Phytoremediation and Rhizoremediation 9A, 237 - 257.
Vrba, J., Kopáček J., Bitl T., Nedoma J., Štrojsová A., Nedbalová L. Kohout L. & Fótt J. 2006: A key role of aluminium in phosphorus availability, food web structure, and plankton dynamics in strongly acidified lakes. Biologia 61, 441 - 451.
Weijschede J., Martínková J., de Kroon H. & Huber H. 2006: Shade avoidance in Trifolium repens: costs and benefits of plasticity inpetiole length and leaf size. New Phytologist 172, 655 - 666.
Welker M, Marsalek B, Sejnohova L. & von Dohren H 2006: Detection and identification of oligopeptides in Microcystis (cyanobacteria) colonies: Toward an understanding of metabolic diversity. Peptides 27, 2090 - 2103.