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Mihulka S., Pyšek P., Martínková J. & Jarošík V. 2006: Invasiveness of Oenothera congeners alien to Europe: Jack of all trades, master of invasion? Perspectives in Plant Ecology Evolution and Systematics 8, 83 - 96.
Mildén M., Münzbergová Z., Herben T. & Ehrlén J. 2006: Metapopulation dynamics of a perennial plant, Succisa pratensis, in an agricultural landscape. Ecological Modelling 199, 464 - 475.
Moravcová A., Nedbalová L., Lukavský J. & Rauch O. 2006: Diatom species composition in mountain streams under impact of anthropogenic pollution (Bohemian Forest, Giant Mountains). In: Ács É., Kiss K.T., Padisák J. & Szabó K.É. (eds.): 6th International Symposium Use of algae for Monitoring Rivers. Hungarian Algological Society., 95 - 95.
Moravcová L., Pyšek P., Pergl J., Perglová I. & Jarošík V. 2006: Seasonal pattern of germination and seed longevity in the invasive species Heracleum mantegazzianum. Preslia 78, 287 - 301.
Münzbergová Z. 2006: Effect of population size on prospect of species survival. Folia Geobotanica 41, 137 - 150.
Münzbergová Z. 2006: Ploidy level interacts with population size and habitat conditions to determine degree of herbivory damage in plant populations. Oikos 115, 443 - 452.
Münzbergová Z. & Rybka V. 2006: Změny biodiversity vyšších rostlin. (Changes in biodiversity of vascular plants.) In: Vačkář D. [ed.] Ukazatele změn biodiversity. – Academia, Praha. pp.147-170., 147 - 170.
Navrátilová J., Kučerová A. & Navrátil J. 2006: Problematika mapování rašelinných borů v České republice. (Mapping of the Pine mire forests (priority habitat) in the Czech Republic.) In: Kučera T. et Navrátilová J., Biotopy a jejich vegetační interpretace v ČR, ČBS, Praha, 77 - 90.
Navrátilová J., Navrátil J. & Hájek M. 2006: Relationships between environmental factors and vegetation in nutrient-enriched fens at fishpond margins. Folia Geobotanica 41, 353 - 376.
Nedbalová L., Stuchlík E. & Strunecký O. 2006: Phytoplankton of a high mountain lake (Ľadové Lake, High Tatra Mts): seasonal development and first indications of a response to decreased acid deposition. Biologia 61, 91 - 100.
Nedbalová L., Vrba J., Fott J., Kohout L., Kopáček J., Macek M. & Soldán T. 2006: Biological recovery of the Bohemian Forest lakes from acidification. Biologia 61, 453 - 465.
Nedoma J., & Nedbalová L. 2006: Chlorophyll content of Plešné Lake phytoplankton cells studied with image analysis. Biologia 61, 491 - 498.
Nehrbass N., Winkler E., Pergl J., Perglová I. & Pyšek P. 2006: Empirical and virtual investigation of the population dynamics of an alien plant under the constraints of local carrying capacity: Heracleum mantegazzianum in the Czech Republic. Perspectives in Plant Ecology Evolution and Systematics 7, 253 - 262.
Neuhaslová Z. 2006: Ottova Encyklopedie Česká republika 5. Ottovo nakladatelství, 1 - 5.
Nežerková-Hejcmanová P., Hejcman M., Camara A.A., Antonínová M., Pavlů V., Černý T. & Ba A.T. 2006: Analysis of the herbaceous undergrowth of the woody savanna in the Fathala reserve, Delta du Saloum National park (Senegal). Belgian Journal of Botany 138, 119 - 128.
Oliveira R.S., Castro P.M.L., Dodd J.C. & Vosátka M. 2006: Different native arbuscular mycorrhizal fungi influence the coexistence of two plant species in a highly alcaline anthropogenic sediment. Plant and Soil 287, 209 - 221.
Opravilová, V. & Hájek, M. 2006: The variation of testacean assemblages (Rhizopoda) along the complete base-richness gradient in fens: a case study from the Western Carpathians. Acta protozoologica 45, 191 - 204.
Palice Z. 2006: Nová lichenologická literatura XV. (New lichenological literature, XV.) Bryonora 37, 56 - 64.
Palíková M., Mareš J., Kopp R., Babica P., Kráčmar S. & Navrátil S. 2006: Spektrum mastných kyselin a aminokyselin v mase ryb vystavených působení vodního květu sinic. (Fatty acid and amino acid spectrum in muscles of fish exposed to the action of water bloom of cyanobacteria.) IN: Zborník prednášok a posterov – Hygiena Alimentorum XXVII (ISBN 80-7148-055-X) 27, 137 - 140.
Pašková V., Hilscherová K., Babica P., Pikula J. & Skočovská B. 2006: Efekty expozice sinicové biomasy u křepelky japonské (Coturnix coturnix japonica). (Effects of exposure to cyanobacterial biomass on Japanese quail.) In: Zborník recenzovaných príspevkov – Študentská vedecká konferencia, Prírodovedecká fakulta UK, Bratislava (ISBN 80-88870-58-5), 242 - 244.