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Monnahan P., Kolář F., Baduel P., Sailer C., Koch J., Horvath R., Laenen B., Schmickl R., Paajanen P., Šrámková G., Bohutínská M., Arnold B., Weisman C. M., Marhold K., Slotte T., Bomblies K. & Yant L. 2019: Pervasive population genomic consequences of genome duplication in Arabidopsis arenosa. Nature Ecology and Evolution 3, 457 - 468. doi:10.1038/s41559-019-0807-4
Carlsen M. M., Fér T., Schmickl R., Leong-Škorníčková J., Newman M. & Kress W. J. 2018: Resolving the rapid plant radiation of early diverging lineages in the tropical Zingiberales: Pushing the limits of genomic data. Molecular Phylogenetics and Evolution 128, 55 - 68. doi:10.1016/j.ympev.2018.07.020
du Preez B., Dreyer L. L., Schmickl R., Suda J. & Oberlander K. C. 2018: Plastid capture and resultant fitness costs of hybridization in the Hirta clade of southern African Oxalis. South African Journal of Botany 118, 329 - 341. doi:DOI: 10.1016/j.sajb.2017.06.010
Fér T. & Schmickl R. 2018: HybPhyloMaker: Target Enrichment Data Analysis From Raw Reads to Species Trees. Evolutionary Bioinformatics 14, 1 - 9.
Schmickl R., Marburger S., Bray S. & Yant L. 2017: Hybrids and horizontal transfer: introgression allows adaptive allele discovery. Journal of Experimental Botany 68, 5453 - 5470. doi:10.1093/jxb/erx297
Schmickl R., Liston A., Zeisek V., Oberlander K., Weitemier K., Straub S. C. K., Cronn R. C., Dreyer L. L. & Suda J. 2016: Phylogenetic marker development for target enrichment from transcriptome and genome skim data: the pipeline and its application in southern African Oxalis (Oxalidaceae). Molecular Ecology Resources 16, 1124 - 1135. doi:10.1111/1755-0998.12487
Hohmann N., Schmickl R., Chiang T.-Y., Lučanová M., Kolář F., Marhold K. & Koch M. A. 2014: Taming the wild: resolving the gene pools of non-model Arabidopsis lineages. BMC Evolutionary Biology 2014, 1 - 21. doi:10.1186/s12862-014-0224-x
Kiefer M., Schmickl R., German D. A., Mandáková T., Lysak M. A., Al-Shehbaz I. A., Franzke A., Mummenhoff K., Stamatakis A. & Koch M. A. 2014: BrassiBase: Introduction to a Novel Knowledge Database on Brassicaceae Evolution. Plant and Cell Physiology 55, 1 - 9. doi:10.1093/pcp/pct158
Weitemier K., Straub S. C., Cronn R. C., Fishbein M., Schmickl R., McDonnell A. & Liston A. 2014: Hyb-Seq: Combining target enrichment and genome skimming for plant phylogenomics. Applications in Plant Sciences 2, 1 - 7. doi:10.3732/apps.1400042