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Vondrák J., Halici M. G., Kocakaya M. & Vondráková O. 2012: Teloschistaceae (lichenized Ascomycetes) in Turkey. 1. - some records from Turkey. Nova Hedwigia 94, 385 - 396. doi:10.1127/0029-5035/2012/0007
Vondrák J., Khodosovtsev A., Šoun J. & Vondráková O. 2012: Two new European species from the heterogeneous Caloplaca holocarpa group (Teloschistaceae). Lichenologist 44, 73 - 89. doi:10.1017/S0024282911000636
Vondrák J., Peksa O. & Vondráková O. 2012: Hosts or parasites? Non-specific lichenicolous growth of lichens in dry rock communities as an effective tool for lichenization of young mycobionts. Cibilyev et al. (eds.) Stepi Severnoj Jevrazii - Steppes of northern Eurasia: materialy VI Meždunarodnogo simpoziuma, 157 - 159.
Vondrák J., Šoun J., Vondráková O., Fryday A. M., Khodosovtsev A. & Davydov E. 2012: Absence of anthraquinone pigments is paraphyletic and a phylogenetically unreliable character in the Teloschistaceae. Lichenologist 44, 401 - 418. doi:10.1017/S0024282911000843
Halda J. P., Bouda F., Fessová A., Kocourková J., Malíček J., Müller A., Peksa O., Svoboda D., Šoun J. & Vondrák J. 2011: Lichens recorded during the autimnal bryo-lichenological meeting in Železné hory Mts. (Czech Republic), September 2009. Bryonora 46, 40 - 51.
Joshi Y., Vondrák J., Vondráková O., Nguyen T. T. & Hur J.-S. 2011: Caloplaca allochroa (lichenized Ascomycetes), a new saxicolous lichen species from South Korea. Mycotaxon 117, 261 - 267. doi:10.5248/117.261
Vondrak J. & Kubasek J. 2011: Algal stacks and fungal stacks in lichens and their importance for surviving in extreme habitats. In: Čibiljov (ed.) Voprosi stepevedenia, Učreždenije rossijskoj akademii nauk, Uralskoe otdelenije, Institut stepi, Orenburg, 19 - 22.
Vondrak J., Říha P., Redchenko O., Vondráková O., Hrouzek P. & Khodosovtsev A. 2011: The Caloplaca crenulatella species complex; its intricate taxonomy and description of a new species. Lichenologist 43, 467 - 481. doi:10.1017/S0024282911000466
Wirth V., Vondrák J., de Bruyn U. & Hauck M. 2011: Erstnachweise von Flechtenarten für Deutschland und Frankreich. Herzogia 24, 155 - 158.
Vondrák J.: Lichen-forming and lichenicolous fungi in the herbarium Jan Vondrak (PRA)..