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Hofmeister J., Vondrák J., Malíček J., Palice Z. & Šoun J. 2021: Ochrana biodiverzity horských smrčin za kůrovcové kalamity – lišejníky v NPR Boubínský prales. (Conservation of biodiversity in montane spruce forests in the period of bark beatle outbreak - lichens in the protected area NPR Boubínský prales.) Živa 69, 157 - 161.
Malíček J., Bouda F., Konečná E., Sipman H. & Vondrák J. 2021: New country records of lichenized and non-lichenized fungi from Southeastern Europe. Herzogia 34, 38 - 54. doi:10.13158/heia.34.1.2021.38
Malíček J., Konečná E. & Vondrák J. 2021: Lišejníky NPR Karlovské bučiny. (Lichens of Karlovské bučiny National Nature Reserve (North Bohemia).) Bryonora 68, 1 - 9.
Malíček J., Palice Z., Bouda F., Knudsen K., Šoun J., Vondrák J. & Novotný P. 2021: Atlas českých lišejníků. (Atlas of Czech lichens.) Botanický ústav AV ČR.
Urbanavichus G. P., Urbanavichene I. N., Vondrák J. & Ismailov A. B. 2021: Эпифитные лишайники национального парка «Приэльбрусье» (Северный Кавказ, Россия). Nature Conservation Research 6, 77 - 94. doi:10.24189/ncr.2021.048
Malíček J., Palice Z. & Vondrák J. 2020: Lišejníky pralesa Hojná voda v Novohradských horách. (Lichens of the primeval forest Hojná voda in the Novohradské hory Mts.) Bryonora 66, 51 - 61.
Malíček J., Palice Z., Vondrák J. & Tønsberg T. 2020: Japewia aliphatica (Lecanoraceae, lichenized Ascomycota), a new acidophilous, sorediate-blastidiate lichen from Europe. Phytotaxa 461, 21 - 30. https://doi.org/10.11646/phytotaxa.461.1.3
Nimis P. L. & Vondrák J. 2020: 26) Blastenia. Keys to the Lichens of Italy, University of Trieste, Dept. of Biology. http://italic.units.it/flora/index.php?procedure=ext_key_home&key_id=2013
Nimis P. L. & Vondrák J. 2020: 27) Crustose Teloschistaceae. Keys to the lichens of Italy, University of Trieste, Dept. of Biology. http://italic.units.it/flora/index.php?procedure=ext_key_home&key_id=2040
Spribille T., Fryday A. M., Pérez-Ortega S., Svensson M., Tonsberg T., Ekman S., Holien H., Resl P., Schneider K., Stabentheiner E., Thüs H., Vondrák J. & Sharman L. 2020: Lichens and associated fungi from Glacier Bay National Park, Alaska. Lichenologist 52, 61 - 181. doi:10.1017/S0024282920000079
Urbanavichus G., Vondrák J., Urbanavichene I., Palice Z. & Malíček J. 2020: Lichens and allied non-lichenized fungi of virgin forests in the Caucasus State Nature Biosphere Reserve (Western Caucasus, Russia. Herzogia 33, 90 - 138. doi:10.13158/heia.33.1.2020.90
Vondrák j., Frolov I., Košnar J., Arup U., Veselská T., Halici G., Malíček J. & Sochting U. 2020: Substrate switches, phenotypic innovations and allopatricspeciation formed taxonomic diversity within the lichengenus Blastenia. Journal of Systematics and Evolution 58, 295 - 330. doi:10.1111/jse.12503
Bouda F., Syrovátková L., Halda J. P., Malíček J., Palice Z. & Vondrák J. 2019: Lišejníky zaznamenané béhem 26. jarního setkání bryologicko-lichenologické sekce ČBS ve Zlatohorské vrchovině a v Jeseníkách v dubnu 2019. (Lichens recorded during the 26th Spring Meeting of the Bryological and Lichenological Section of the CBS in the Zlatohorská vrchovina hills and the Jeseníky Mts (Silesia), April 2019.) Bryonora 64, 1 - 20.
Kubásek J. & Vondrák J. 2019: Existují pololišejníky? (Do quasi-lichens exist?) Botanika 7, 15 - 17.
Malíček J., Palice Z., Vondrák J., Kostovčík M., Lenzová V. & Hofmeister J. 2019: Lichens in old‑growth and managed mountain spruce forests in the Czech Republic: assessment of biodiversity, functional traits and bioindicators. Biodiversity and Conservation 28, 3497 - 3528. https://doi.org/10.1007/s10531-019-01834-4
Paukov A., Davydov E., Nordin A., Roux C., Senkardesler A., Sohrabi M., Vondrák J., Frolov I. V., Teptina A. Y. & Shiryaeva A. S. 2019: Three new species, new combinations and a key to known species of Lobothallia (Megasporaceae). Lichenologist 51, 301 - 322. doi:10.1017/S0024282919000264
Šoun J., Malíček J. & Vondrák J. 2019: Zajímavé nálezy lišejníků v Brdech a na Rokycansku. (Interesting records of lichens in the Brdy Mts and the Rokycany region.) Erica 26, 45 - 64.
Vondrák J., Frolov I., Davydov E., Yakovchenko L., Malíček J., Svoboda S. & Kubásek J. 2019: The lichen family Teloschistaceae in the Altai-Sayan region (Central Asia). Phytotaxa 396, 1 - 66. doi:10.11646/phytotaxa.396.1.1
Vondrák J. & Kubásek J. 2019: Epiphytic and epixylic lichens in forests of the Šumava mountains in the Czech Republic, abundance and frequency assessments. Biologia 74, 405 - 418. doi:10.2478/s11756-019-00207-0
Vondrák J., Urbanavichus G., Palice Z., Malíček J., Urbanavichene I., Kubásek J. & Ellis C. 2019: The epiphytic lichen biota of Caucasian virgin forests: a comparator for European conservation. Biodiversity and Conservation 28, 3257 - 3276. doi:10.1007/s10531-019-01818-4