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Kirschner J. 2009: Typification of Zaluzianskya villosa F. W. Schmidt (Scrophulariaceae-Manuleae). South African Journal of Botany 75, 588 - 590. doi:10.1016/j.sajb.2009.02.176
Krahulcová A., Rotreklová O., Krahulec F., Rosenbaumová R. & Plačková I. 2009: Enriching ploidy level diversity: the role of apomictic and sexual biotypes of Hieracium subgen. Pilosella (Asteraceae) that coexist in polyploid populations. Folia Geobotanica 44, 281 - 306. doi:10.1007/s12224-009-9041-1
Krahulcová A., Vladimirov V., Krahulec F. & Bräutigam S. 2009: The agamic complex of Pilosella (Asteraceae) in Bulgaria and in the southwestern Romania: variation in ploidy level and breeding systems. Phytologia Balcanica 15, 377 - 384.
Lepší M., Kaplan Z. & Lepší P. 2009: Sorbus gemella Kovanda. (Sorbus gemella Kovanda.) Severočeskou přírodou 40, 122 - 126.
Lisická E. & Liška J. 2009: RNDr. Anna Lackovičová, CSc. (26.7.1949) - obzretie sa v plnej práci. (RNDr. Anna Lackovičová, CSc. (26.7.1949) – looking back in midway.) Bryonora 43, 17 - 18.
Liška J. 2009: Česká a slovenská lichenologická bibliografie XXII. (Czech and Slovak lichenological bibliography, XXII.) Bryonora 44, 46 - 48.
Liška J. 2009: Houby po česku. (Fungi in Czech.) Vesmír 88, 64 - 65.
Liška J., Lisická E. & Lackovičová A. 2009: Typification of Physcia aipolioides (Physciaceae, lichenized fungi). Mycotaxon 107, 335 - 338.
Mráz P., Chrtek J. & Šingliarová B. 2009: Geographical parthenogenesis, genome size variation and pollen production in the arctic-alpine species Hieracium alpinum. Botanica Helvetica 119, 41 - 51. doi:10.1007/s00035-009-0055-3
Réblová M. 2009: Teleomorph of Rhodoveronaea (Sordariomycetidae) discovered and re-evaluation of Pleurophragmium. Fungal Diversity 36, 129 - 139. PDF: http://www.fungaldiversity.org/fdp/sfdp/FD36-9.pdf
Réblová M. & Štěpánek V. 2009: New fungal genera, Tectonidula gen. nov. for Calosphaeria-like fungi with holoblastic-denticulate conidiogenesis and Natantiella gen. nov. for three species segregated from Ceratostomella. Mycological Research 113, 991 - 1002. doi:10.1016/j.mycres.2009.06.003
Stenroos S., Huhtinen S., Lesonen A., Palice Z. & Printzen C. 2009: Puttea, gen. nov., erected for the enigmatic lichen Lecidea margaritella. Bryologist 112, 544 - 557. doi:10.1639/0007-2745-112.3.544
Svensson M. & Palice Z. 2009: Additions to the montane lichen flora of Sweden. Graphis Scripta 2009, 23 - 32.
Zalewska-Gałosz J., Ronikier M. & Kaplan Z. 2009: The first European record of Potamogeton ×subobtusus identified using ITS and cpDNA sequence data. Preslia 81, 281 - 292.
Záveská Drábková L., Kirschner J., Štěpánek J., Záveský L. & Vlček Č. 2009: Analysis of nrDNA polymorphism in closely related diploid sexual, tetraploid sexual and polyploid agamospermous species. Plant Systematics and Evolution 278, 67 - 85, app.1-11. doi:10.1007/s00606-008-0134-8
Záveská Drábková L. & Vlček Č. 2009: DNA variation within Juncaceae: Comparison of impact of organelle regions on phylogeny. Plant Systematics and Evolution 278, 169 - 186. doi:10.1007/s00606-008-0135-7
Buttler K. P., Hand R. & Kirschner J. 2008: 7. Valeriana-officinalis-Gruppe. Kochia 3, 82 - 86.
Diederich P., Palice Z. & Ertz D. 2008: Cheiromycina ananas is a synonym of Dictyocatenulata alba, a widespread, lichenized, synnematous hyphomycete herewith reported as new to Europe. Sauteria 15, 205 - 214.
Drábková L. & Pačes V. 2008: Report on the Willi Hennig Society workshop "Phylogenetic analysis: theory and practice" at the Institute of Botany Academy of Sciences of the Czech Republic. Cladistics 24, 108 - 109.
Chrtek J., Dočkalová Z., Kochánková J. & Douda J. 2008: Setaria gussonei Kerguélen. (Setaria gussonei Kerguélen.) Zprávy České Botanické Společnosti 43, 321 - 322.